More Importing Features
From MedITEX - Wiki
This page contains additional importing features supported by MedITEX.
Please plan enough time for the preparation of the data import as it usually takes several tries to bring all data in required structure.
Contents |
Patient demographics import
You need to prepare an import file which is a list in Excel or CSV format where each line is ONE patient.
Click here to download an example of Patient demographics import file. |
The following elements should be included in this file:
Column name | Column content | |
1. | PATIENT_ID |
Patient ID number (Integer) |
2. | PARTNER_ID |
Partner ID number (Integer) |
3. | DOB | Patient date of birth (Date) |
4. | NAME | Patient name (100 characters) |
5. | FIRST_NAME |
Patient first name (100 characters) |
6. | GENDER | Patient gender (1 character - W/M) |
7. | POSTCODE | Patient address: postal code (50 characters) |
8. | CITY | Patient address: city (50 characters) |
9. | STREET |
Patient address: street (255 characters) |
10. | PHONE | Patient private phone number (50 characters) |
11. | LOCATION (CLINIC) | The clinic where the patient is located (250 characters) |
Please make sure that your current Patient IDs from your existing data are unique.
Required fields are:
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Cryo storage import
It is mandatory to prepare an import file where each line is ONE straw.
Click here to download an example of Cryo storage import file. |
Before importing, it is important to know that:
- The cryo storage dimension must be configured in MedITEX IVF Settings;
- The patient demographics must already be imported into the MedITEX Database;
- Each line must contain the Patient ID, which is the identification for inserting the cryo information for the correct patient. Important is that Patient ID is unique like already mentioned above;
- Type of semen material can be specified in: Native sperm, Prep. Sperm, Tissue, Tissue left, Tissue right, Tissue ambilateral, MESA, MESA left, MESA right, MESA ambilateral, Supernatant, Supernatant left, Supernatant right, Supernatant ambilateral, PESA, TESA, TESE.
The following elements/conditions should be included in the import file:
Column name | Column content | |
1. | PATIENT ID |
Patient ID number (Integer) |
2. | COLLECTION_DATE |
Date of sperm collection/follicle aspiration (Date) |
3. | FREEZING_DATE |
Date of freezing (Date) |
4. | STORAGE_DATE |
Date of storage (Date) |
5. | NO_OOCYTES |
Total number of collected oocytes (Integer) |
6. | IVF_PNs |
Number of PNs after IVF (Integer) |
7. | ICSI_PNs |
Number of PNs after ICSI (Integer) |
8. | IVF_EMBs |
Number of embryos after IVF (Integer) |
9. | ICSI_EMBs |
Number of embryos after ICSI (Integer) |
10. | OVARIAN_TISSUE |
Ovarian tissue cryopreservation (OOC/EMB/PN) (0=No, 1=Yes) |
11. | SEMEN_MATERIAL | Type of semen material specification (100 characters) |
12. | STRAW_ID | Straw ID (50 characters) |
13. | CRYO_TECHNIQUE | Cryo technique used (50 characters) |
14. |
STORAGE_LOCATION |
Storage location description e.g. Container/Tank (128 characters) |
15. | STORAGE_DIM1 |
Storage dimension e.g. Tank level (128 characters) |
16. |
STORAGE_DIM2 |
Storage dimension e.g. Canister level (128 characters) |
17. | STORAGE_DIM3 |
Storage dimension e.g. Goblet level (128 characters) |
18. | POSITION | Straw position (10 characters) |
19. | COLOUR1 | First color defining the straw (10 characters) |
20. | COLOUR2 | Second color defining the straw (10 characters) |
21. | CRYOPRESERVED_BY | Staff responsible of the cryopreservation (100 characters) |
22. | STORED_BY | Staff responsible of the storage (100 characters) |
Required fields are:
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Semen analyses Import
PATIENT_ID | Patient ID number (Integer) |
SAMPLE_ID | Sample ID number (Integer) |
COLLECTION_DATE |
Date of sperm collection (Date) Preferred format: dd.mm.yyyy hh:mm |
PURPOSE |
Purpose of sample collection (128 characters) 0 = Semen analysis, diagnostics 1 = IVF 2 = ICSI 3 = Insemination 4 = Cryopreservation 5 = Control 6 = IMSI 7 = IVM 8 = Fertility preservation 9 = PICSI 11 = Other
A sperm sample can have several collection purposes. If it is the case, the purposes’ ID’s should be separated by a “,”. E.g.: 0,3,8,11 |
FOR_DONATION |
If the sample is marked for donation (Boolean) 0 = No 1 = Yes |
COLLECTION_METHOD |
Method of sample collection (Integer) 0 = Not specified 1 = antegrade ejaculation 2 = retrograde ejaculation 3 = Cryo sperm 4 = MESA 5 = frozen/thawed MESA 6 = PESA 7 = frozen/thawed PESA 8 = TESE 9 = frozen/thawed TESE 10 = Electrostimulation 11 = Spermatocele 12 = Donor 13 = TESA 14 = frozen/thawed TESA 15 = ESA 16 = frozen/thawed ESA 23 = Micro-TESA 24 = Micro-TESE Please note that only one ID referring to sample collection method could be chosen. |
COLLECTION_PLACE |
Place of sample collection (Integer) 1 = At home 2 = At clinic |
COLLECTION_DIFFICULTIES | Sample collection difficulties (200 characters) |
ABS_PERIOD | Abstinence period [days] (Integer) |
ANALYSIS_START |
Analysis start time (Time) Format: hh:mm:ss |
ANALYSED_BY |
Name of the staff performing the sperm sample analysis (113 characters) This will be properly imported once the staff members are inserted in the system. |
APPEARANCE |
Sample appearance (128 characters) 0 = Not specified 1 = Normal 2 = Transparent 3 = Flocculent 4 = Yellowish 5 = Hemospermia 6 = Colloidal particles 7 = Colloidal plaque 8 = Debris
A sperm sample can have several appearances. If it is the case, the appearances’ ID’s should be separated by a “,”. E.g.: 0,3,5,8 |
SMELL |
Smell of the sperm sample (Integer) 1 = Typical 2 = Foul 3 = Other |
VISCOSITY |
Viscosity of the sperm sample (Integer) 0 = Normal 1 = Increased 2 = Lowered |
LIQQUEFACTION_TIME | Sperm sample liquefaction time [minutes] (Integer) |
AGGLUTINATION |
Sperm agglutination (Boolean) 0 = No 1 = Yes |
TREATMENT | Sperm treatment (200 characters) |
SCORE | Sperm sample score (10 characters) |
NA_VOLUME | Native sperm sample volume in [ml] (Decimal(4,2)) |
NA_PH | Native sperm PH (Decimal(4,2)) |
NA_CONCENTRATION | Native sperm concentration [Mio/ml] (Decimal(5,3)) |
NA_VITALITY | Native sperm Vitality [%] (Decimal(5,2)) |
NA_LEUCOCYTES | Native sperm leucocytes [Mio/ml] (Decimal(9,4)) |
NA_ROUND_CELLS | Native sperm round cells [Mio/ml] (Decimal(9,2)) |
NA_QUANTIFICATION | Native sperm quantification possibility (Integer)
0 = Not specified 1 = Yes 2 = No |
NA_PEROXIDASE | Native sperm peroxidase-positive cells [10^6/ml] (Decimal(5,2)) |
NA_IMMUNOBEAD | Native sperm immunobead test [% adherent] (Decimal(5,2)) |
NA_MAR | Native sperm MAR test [% adherent] (Decimal(5,2)) |
NA_MAR_IGG | Native sperm MAR test - IgG [%] (Decimal(5,2)) |
NA_MAR_IGA | Native sperm MAR test - IgA [%] (Decimal(5,2)) |
NA_WHO_AB | Native sperm WHO AB [%] (Decimal(5,2)) |
NA_WHO_C | Native sperm WHO C [%] (Decimal(5,2)) |
NA_WHO_D | Native sperm WHO D [%] (Decimal(5,2)) |
NA_NORMAL_FORMS | Native sperm normal forms [%] (Decimal(5,2)) |
NA_HEAD_DEF | Native sperm head defects [%](Decimal(5,2)) |
NA_NECK_MID_DEF | Native sperm neck and midpiece defects [%](Decimal(5,2)) |
NA_TAIL_DEF | Native sperm tail defects [%](Decimal(5,2)) |
NA_ERC | Native sperm excess residual cytoplasm ERC [%](Decimal(5,2)) |
NA_MULT_DEF | Native sperm multiple defects [%](Decimal(5,2)) |
NA_TZI | Native sperm teratozoospermia index TZI (Decimal(5,2)) |
AP_VOLUME | After preparation sample volume in [ml] (Decimal(4,2)) |
AP_CONCENTRATION | After preparation sample concentration [Mio/ml] (Decimal(5,3)) |
AP_VITALITY | After preparation sample Vitality [%](Decimal(5,2)) |
AP_LEUCOCYTES | After preparation sample leucocytes [Mio/ml] (Decimal(9,4)) |
AP_ROUND_CELLS | After preparation sample round cells [Mio/ml] (Decimal(9,2)) |
AP_QUANTIFICATION |
After preparation, if sample quantification was possible (Integer) 0 = Not specified 1 = Yes 2 = No |
AP_ICSI |
After preparation sample ICSI possibility (Integer) 0 = Not specified 1 = Yes 2 = No This should only be filled if the previous quantification was NOT possible. |
AP_PEROXIDASE | After preparation sample peroxidase-positive cells [10^6/ml] (Decimal(5,2)) |
AP_IMMUNOBEAD | After preparation sample immunobead test [% adherent] (Decimal(5,2)) |
AP_MAR | After preparation sample MAR test [% adherent] (Decimal(5,2)) |
AP_MAR_IGG | After preparation sample MAR test - IgG [%](Decimal(5,2)) |
AP_MAR_IGA | After preparation sample MAR test - IgA [%](Decimal(5,2)) |
AP_WHO_AB | After preparation sample WHO AB [%](Decimal(5,2)) |
AP_WHO_C | After preparation sample WHO C [%](Decimal(5,2)) |
AP_WHO_D | After preparation sample WHO D [%](Decimal(5,2)) |
AP_NORMAL_FORMS | After preparation sample normal forms [%](Decimal(5,2)) |
AP_HEAD_DEF | After preparation sample head defects [%](Decimal(5,2)) |
AP_NECK_MID_DEF | After preparation sample neck and midpiece defects [%](Decimal(5,2)) |
AP_TAIL_DEF | After preparation sample tail defects [%](Decimal(5,2)) |
AP_ERC | After preparation sample excess residual cytoplasm ERC [%](Decimal(5,2)) |
AP_MULT_DEF | After preparation sample multiple defects [%](Decimal(5,2)) |
AP_TZI | After preparation sample teratozoospermia index TZI (Decimal(5,2)) |
PREP_DATE |
Preparation date of the sample (Date)
Preferred format: dd.mm.yyyy hh:mm |
PREP_BY |
Name of the staff performing the sperm sample analysis (113 characters) This will be properly imported once the staff members are inserted in the system. |
PREP_METHOD |
Preparation method (Integer) 1 = None 2 = Density gradient 3 = Swim-up 4 = Wash / centrifugation 5 = Incubation 6 = Glass wool filtration 7 = Migration / sedimentation 8 = Concentration 9 = Unknown 10 = Other 11 = Mechanical 12 = Enzymatical 13 = Density gradient plus swim-up 14 = Pellet resuspended 15 = MACS
A maximum of 4 methods can be allowed. In case of more than 1 method, the methods’ ID’s should be separated by a “,”. E.g.: 1,3,5,8 |
DNA_FRAG | Sperm sample DNA fragmented [%] (Decimal(5,2)) |
DIAGNOSIS |
Sperm sample diagnosis (128 characters) 1 = Normozoospermia 2 = Aspermia 3 = Azoospermia 4 = Azoospermia obstructive 5 = Azoospermia not obstructive 6 = Oligozoospermia 7 = Asthenozoospermia 8 = Teratozoospermia 9= Hyperzoospermia 10 = OAT I 11 = OAT II 12 = OAT III 13 = Cryptozoospermia 14 = Viskopathy 15 = Necrozoospermia 16 = Globozoospermia 17 = Hypospermia 18 = Haematospermia 19 = Pyospermia 20 = Other 21 = Dispermia lieve 22 = Dispermia moderata 23 = Dispermia severa 24 = Necrospermia 25 = Eiaculazione Retrogada 26 = Aneiaculazione 27 = Anorgasmia 28 = Polyzoospermia 34 = Hyperspermia
A sperm sample can have several diagnoses. If it is the case, the diagnoses ID’s should be separated by a “,”. E.g.: 1,3,10,18 |
FINDING |
Sample diagnosis finding status (Integer) 1 = Normal 2 = Abnormal |
TIME_COLL_USAGE |
Time between sperm sample collection and usage (Time) Format: hh:mm:ss |
NO_MOT_SPERM_INSEM | Number of motile sperms inseminated [Mio.] (Decimal(9,2)) |
NOTE | Semen analysis note (500 characters) |
VOL_INSEM | Volume inseminated [ml] (Decimal(9,3)) |
24H_MOT | Sperm sample 24h motility rate[%](Decimal(5,2)) |
Insurance Import
It is possible to import insurance companies by providing a spreadsheet with the information described on this section.
An example of this file can be downloaded from the link below. This document contains the insurance information about one insurer.
Click here to download an example of Insurance information import file. |
The structure of this file is described in the table below:
Column name | Column content | |
1. | IN_NAME | Insurer name (50 characters) |
2. | IN_INSURER_NO | Insurer number (30 characters) |
3. | IN_ADDRESS | Insurer address (255 characters) |
4. | IN_EMAIL | Insurer email (50 characters) |
5. | IN_PHONE | Insurer phone (50 characters) |
6. | IN_FAX | Insurer fax (50 characters) |
7. | IN_COUNTRY |
Insurer country (numeric code related to the country) The list of countries and corresponding codes can be downloaded here |
8. | IN_CLINIC_ID_NUMBER | Insurer clinic ID number (defined by the clinic itself) |
9. | IN_IS_INSURANCE | Insurer / Funder (1 = insurer, 0 = funder) |
10. | IN_IS_ECLAIM_BILLING | E-claim billing (1 = yes, 0 = no) |
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